Similar sensitivity to BLAST and PSI-BLAST but orders of magnitude faster
Codoncode aligner free software#
Software suite to search and cluster huge sequence sets. Hannes Hauswedell, Jochen Singer, Knut Reinert High performance local aligner compatible to BLAST, but much faster supports SAM/BAM High-performance general purpose sequence similarity search tool Pairwise comparison of profile Hidden Markov models very sensitive Local and global search with profile Hidden Markov models, more sensitive than PSI-BLASTĭurbin R, Eddy SR, Krogh A, Mitchison G Genoogle uses indexing and parallel processing techniques for searching DNA and Proteins sequences. Software for ultra fast local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). Global:Global (GG), Global:Local (GL) alignment with statistics Local search with fast k-tuple heuristic, slower but more sensitive than BLAST GPU accelerated Smith Waterman algorithm for multiple shared-host GPUsīLASTX and BLASTP aligner based on double indexingīuchfink B, Xie C, Huson DH, Reuter K, Drost HG Position-specific iterative version CSI-BLAST more sensitive than PSI-BLAST Sequence-context specific BLAST, more sensitive than BLAST, FASTA, and SSEARCH. īurdyshaw CE, Sawyer S, Horton MD, Brook RG, Rekapalli B Distributed with the latest version of BLAST, this wrapper facilitates parallelization of the algorithm on modern hybrid architectures with many nodes and many cores within each node. NCBI compliant multinode and multicore BLAST wrapper. Local search with fast k-tuple heuristic (Basic Local Alignment Search Tool)Īltschul SF, Gish W, Miller W, Myers EW, Lipman DJ
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